Gel2DE - A software tool for correlation analysis of 2D gel electrophoresis data

prot2D : Statistical Tools for volume data from 2D Gel Electrophoresis

This document briefly describes how to use the prot2D package. An R package designed to analyze (i.e. Normalize and select significant spots) data issued from 2D SDS PAGE experiments. prot2D provides a simple interface for analysing data from 2D gel experiments. Functions for normalization as well as selecting significant spots are provided. Furthermore, a function to simulates realistic 2D Gel...

GelClust: A software tool for gel electrophoresis images analysis and dendrogram generation

This paper presents GelClust, a new software that is designed for processing gel electrophoresis images and generating the corresponding phylogenetic trees. Unlike the most of commercial and non-commercial related softwares, we found that GelClust is very user-friendly and guides the user from image toward dendrogram through seven simple steps. Furthermore, the software, which is implemented in...

2D Gel Electrophoresis - An Overview

Online tool for analysis of denaturing gradient gel electrophoresis profiles.

We present an online tool (EquiBands, http://www.univie.ac.at/IECB/limno/equibands/EquiBands.html) that quantifies the matching of two bands considered to be the same in different samples, even when samples are applied to different denaturing gradient gel electrophoresis gels. With an environmental example we demonstrate the procedure for the classification of two bands of different samples wit...

Statistical Analysis of Gel Electrophoresis Data

Two-dimensional gel electrophoresis (2-DE) methods such as two-dimensional polyacrylamide gel electrophoresis (2D-PAGE; O’Farrell (1975)) and two-dimensional difference gel electrophoresis (2D-DIGE; Ünlü et al. (1997)) are popular techniques for protein separation because they allow researchers to characterize quantitative protein changes on a large scale. Thus, 2-DE is frequently used as an in...